Statistical analysis of amplified fragment length polymorphism data: a toolbox for molecular ecologists and evolutionists
نویسندگان
چکیده
منابع مشابه
DNA Extraction Strategies for Amplified Fragment Length Polymorphism Analysis
A polymerase chain reaction-based DNA typing method, amplified fragment length polymorphism (AMP-FLP) analysis, has shown promise as a means of analyzing forensic biological evidence. A variety of DNA extraction methods were evaluated for their suitability for AMP-FLP analysis. Factors that were considered in the evaluation included DNA yield, ability of DNA to be amplified, the presence of DNA...
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We examined 154 Norwegian B. cereus and B. thuringiensis soil isolates (collected from five different locations), 8 B. cereus and 2 B. thuringiensis reference strains, and 2 Bacillus anthracis strains by using fluorescent amplified fragment length polymorphism (AFLP). We employed a novel fragment identification approach based on a hierarchical agglomerative clustering routine that identifies fr...
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P. H. M. SAVELKOUL,* H. J. M. AARTS, J. DE HAAS, L. DIJKSHOORN, B. DUIM, M. OTSEN, J. L. W. RADEMAKER, L. SCHOULS, AND J. A. LENSTRA Department of Medical Microbiology and Infection Control, University Hospital Vrije Universiteit, Amsterdam, DLO-State Institute of Quality Control of Agricultural Products Centre De Born, Wageningen, Novartis Seeds bv, Section Biotechnology, Enkhuizen, Department...
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The domesticated silkworm, Bombyx mori, is of high commercial importance as a silk producer and is also widely used for implementation of basic and applied research. It is important to understand its genome organization using molecular markers for genetic studies and for breeding purposes. In this study, a genetic linkage map using 204 amplified fragment length polymorphism (AFLP) markers was d...
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An evaluation of fluorescent amplified fragment length polymorphism (FAFLP) for typing Neisseria gonorrhoeae using 52 isolates revealed that its discriminatory power approached that of Opa-typing in identifying epidemiologically linked isolates. Automated, accurate sizing of FAFLP amplified fragments permits objective data analysis and storage, making it an attractive method for large surveilla...
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ژورنال
عنوان ژورنال: Molecular Ecology
سال: 2007
ISSN: 0962-1083,1365-294X
DOI: 10.1111/j.1365-294x.2007.03435.x